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[MRG] document gather abund tests a bit better; minor refactoring #886

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merged 9 commits into from
Apr 28, 2020

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ctb
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@ctb ctb commented Feb 2, 2020

Ref #885, update tests with some slightly better documentation about what abundance projection is doing.

Fixes #461

ref @dkoslicki who was interested in how sourmash did these things.

  • Is it mergeable?
  • make test Did it pass the tests?
  • make coverage Is the new code covered?
  • Did it change the command-line interface? Only additions are allowed
    without a major version increment. Changing file formats also requires a
    major version number increment.
  • Was a spellchecker run on the source code and documentation after
    changes were made?

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codecov bot commented Feb 2, 2020

Codecov Report

Merging #886 into master will not change coverage.
The diff coverage is n/a.

Impacted file tree graph

@@           Coverage Diff           @@
##           master     #886   +/-   ##
=======================================
  Coverage   92.22%   92.22%           
=======================================
  Files          72       72           
  Lines        5211     5211           
=======================================
  Hits         4806     4806           
  Misses        405      405           

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ctb commented Apr 23, 2020

I think the main thing still needed here is to update the docs with some actual numbers re gather-abund output and meaning.

@ctb ctb changed the title [WIP] document gather abund tests a bit better; minor refactoring [MRG] document gather abund tests a bit better; minor refactoring Apr 24, 2020
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ctb commented Apr 24, 2020

hi @taylorreiter @luizirber ready for review.

@luizirber luizirber merged commit bf7475e into master Apr 28, 2020
@luizirber luizirber deleted the doc/gather_abund_tests branch April 28, 2020 22:03
@ctb ctb mentioned this pull request Jun 23, 2020
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Converting weighted abundance to raw counts
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